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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
208
ChIP-seq
89
total RNA-seq
9
WGBS
6
RRBS
5
ATAC-seq
5
DNase-seq
1
FAIRE-seq
Assay category
208
DNA binding
Target of assay
199
histone modification
198
histone
109
broad histone mark
narrow histone mark
50
control
47
transcription factor
8
RNA binding protein
3
chromatin remodeller
Date released
368
November, 2017
208
August, 2017
101
May, 2021
101
October, 2019
86
May, 2019
78
December, 2017
70
November, 2018
63
October, 2018
57
April, 2019
34
December, 2018
32
August, 2021
23
May, 2020
22
January, 2019
20
June, 2019
17
September, 2018
16
February, 2018
13
October, 2017
9
November, 2019
8
February, 2021
6
September, 2017
Available data
129
bam
129
fastq
111
bigWig
82
bed narrowPeak
56
tagAlign
27
bed bed3+
24
bed broadPeak
20
bigBed narrowPeak
8
bigBed broadPeak
Organism
203
Homo sapiens
Biosample type
126
tissue
51
in vitro differentiated cells
31
primary cell
Organ
89
connective tissue
60
pancreas
38
adipose tissue
35
liver
18
epithelium
15
musculature of body
Project
208
AMP
Genome assembly (visualization)
113
hg19
99
GRCh38
Lab
208
AMP-T2D consortium
Audit category:
28
missing controlled_by
Audit category:
9
inconsistent control read length
2
inconsistent assembly
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
208 results
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Clear Filters
ChIP-seq
tissue
liver
35
islet of Langerhans
28
subcutaneous abdominal adipose tissue
25
skeletal muscle tissue
15
white adipose tissue
12
+ See 2 more…
in vitro differentiated cells
adipocyte
51
primary cell
pancreatic alpha cell
9
pancreatic beta cell
9
skeletal muscle myoblast
9
pancreatic endocrine cell
4
See all biosamples
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