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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
126
ChIP-seq
89
total RNA-seq
9
WGBS
6
RRBS
1
DNase-seq
Assay category
126
DNA binding
89
Transcription
15
DNA methylation
1
DNA accessibility
Target of assay
76
histone
76
histone modification
50
control
48
broad histone mark
28
narrow histone mark
Date released
692
February, 2021
314
May, 2020
266
May, 2021
231
August, 2017
213
August, 2021
168
July, 2018
162
May, 2022
140
February, 2023
125
October, 2019
101
July, 2019
93
November, 2017
61
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
31
October, 2018
27
September, 2018
25
February, 2020
24
November, 2019
23
February, 2018
23
May, 2019
21
December, 2017
19
April, 2020
16
January, 2021
15
April, 2019
15
May, 2023
14
November, 2018
14
November, 2020
10
December, 2019
10
October, 2017
9
January, 2019
8
January, 2018
8
June, 2019
7
August, 2020
6
September, 2017
5
December, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
248
fastq
243
bam
233
bigWig
bed narrowPeak
89
tsv
85
tagAlign
42
bigBed narrowPeak
41
bed broadPeak
19
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
230
Homo sapiens
Biosample type
197
tissue
20
in vitro differentiated cells
14
primary cell
Organ
118
pancreas
62
connective tissue
42
adipose tissue
36
liver
13
musculature of body
12
epithelium
Project
231
AMP
Genome assembly (visualization)
96
hg19
93
GRCh38
Lab
231
AMP-T2D consortium
Audit category:
missing controlled_by
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
231 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
DNase-seq
tissue
islet of Langerhans
15
89
subcutaneous abdominal adipose tissue
35
3
liver
31
3
1
skeletal muscle tissue
9
4
adipose tissue
1
3
+ See 2 more…
in vitro differentiated cells
adipocyte
20
primary cell
pancreatic alpha cell
6
pancreatic beta cell
6
skeletal muscle myoblast
1
1
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