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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
293
ChIP-seq
89
total RNA-seq
9
WGBS
6
RRBS
Assay category
293
DNA binding
89
Transcription
15
DNA methylation
DNA accessibility
Target of assay
196
histone modification
195
histone
107
broad histone mark
87
narrow histone mark
50
control
47
transcription factor
8
RNA binding protein
3
chromatin remodeller
Date released
666
February, 2021
406
November, 2017
397
August, 2017
365
May, 2021
280
October, 2019
241
May, 2020
237
August, 2021
168
July, 2018
120
May, 2019
101
May, 2022
100
February, 2023
100
July, 2019
94
December, 2017
80
April, 2019
78
November, 2018
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
35
November, 2019
31
June, 2019
30
January, 2019
25
February, 2020
15
October, 2017
14
November, 2020
10
December, 2019
9
April, 2020
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
March, 2019
Available data
275
fastq
269
bam
259
bigWig
129
bed narrowPeak
89
tsv
83
tagAlign
37
bed broadPeak
33
bed bed3+
29
bigBed narrowPeak
12
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
391
Homo sapiens
Biosample type
278
tissue
67
in vitro differentiated cells
52
primary cell
Organ
182
pancreas
123
connective tissue
56
adipose tissue
52
liver
26
epithelium
26
musculature of body
Project
397
AMP
Genome assembly (visualization)
263
hg19
239
GRCh38
Lab
397
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
inconsistent assembly
1
inconsistent control run_type
audit.WARNING.category!
inconsistent assembly
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
397 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
tissue
islet of Langerhans
42
89
liver
48
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
pancreas
13
+ See 2 more…
in vitro differentiated cells
adipocyte
67
primary cell
skeletal muscle myoblast
13
1
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic endocrine cell
12
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