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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
216
ChIP-seq
89
total RNA-seq
9
WGBS
5
RRBS
3
DNase-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
216
DNA binding
89
Transcription
14
DNA methylation
6
DNA accessibility
Target of assay
157
histone modification
156
histone
92
broad histone mark
63
narrow histone mark
37
control
22
transcription factor
5
RNA binding protein
2
chromatin remodeller
Date released
667
February, 2021
387
November, 2017
325
August, 2017
315
August, 2021
280
October, 2019
194
May, 2020
193
May, 2021
163
June, 2019
120
July, 2018
117
February, 2023
115
May, 2019
93
December, 2017
84
November, 2018
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
63
March, 2020
61
November, 2019
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
19
April, 2020
19
October, 2017
15
May, 2023
10
November, 2020
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
202
fastq
199
bigWig
197
bam
108
bed narrowPeak
89
tsv
73
tagAlign
27
bed broadPeak
23
bigBed narrowPeak
19
bed bed3+
5
bed bedMethyl
5
bigBed bedMethyl
1
bigBed broadPeak
Organism
318
Homo sapiens
Biosample type
262
tissue
63
in vitro differentiated cells
primary cell
Organ
137
pancreas
108
connective tissue
54
liver
45
adipose tissue
26
musculature of body
Project
325
AMP
Genome assembly (visualization)
202
hg19
180
GRCh38
Lab
325
AMP-T2D consortium
Audit category:
missing controlled_by
Audit category:
11
inconsistent control read length
1
inconsistent assembly
biosample_type!
primary cell
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
325 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
DNase-seq
ATAC-seq
FAIRE-seq
tissue
islet of Langerhans
32
89
1
1
liver
48
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
pancreas
14
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in vitro differentiated cells
adipocyte
62
1
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