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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
232
ChIP-seq
89
total RNA-seq
9
WGBS
5
RRBS
3
DNase-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
232
DNA binding
89
Transcription
14
DNA methylation
6
DNA accessibility
Target of assay
156
histone modification
155
histone
90
broad histone mark
64
narrow histone mark
39
transcription factor
37
control
6
RNA binding protein
Date released
667
February, 2021
376
November, 2017
341
August, 2017
315
August, 2021
280
October, 2019
194
May, 2020
193
May, 2021
163
June, 2019
120
July, 2018
117
February, 2023
115
May, 2019
83
December, 2017
82
November, 2018
80
April, 2019
77
July, 2019
73
October, 2018
66
May, 2022
63
March, 2020
61
November, 2019
47
September, 2023
37
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
10
November, 2020
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
218
fastq
215
bigWig
213
bam
98
bed narrowPeak
89
tsv
73
tagAlign
29
bed bed3+
27
bed broadPeak
18
bigBed narrowPeak
5
bed bedMethyl
5
bigBed bedMethyl
1
bigBed broadPeak
Organism
334
Homo sapiens
Biosample type
279
tissue
62
in vitro differentiated cells
primary cell
Organ
143
pancreas
119
connective tissue
57
adipose tissue
53
liver
26
musculature of body
Project
341
AMP
Genome assembly (visualization)
218
hg19
196
GRCh38
Lab
341
AMP-T2D consortium
Audit category:
27
missing controlled_by
Audit category:
inconsistent control read length
1
inconsistent assembly
biosample_type!
primary cell
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
341 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
DNase-seq
ATAC-seq
FAIRE-seq
tissue
islet of Langerhans
42
89
1
1
liver
47
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
white adipose tissue
12
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in vitro differentiated cells
adipocyte
61
1
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