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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
104
ChIP-seq
2
ATAC-seq
2
DNase-seq
1
FAIRE-seq
Assay category
104
DNA binding
5
DNA accessibility
Target of assay
82
histone modification
81
histone
44
broad histone mark
36
narrow histone mark
22
transcription factor
5
RNA binding protein
2
chromatin remodeller
Date released
307
November, 2017
168
October, 2019
163
June, 2019
109
August, 2017
103
August, 2021
93
May, 2019
73
November, 2018
72
December, 2017
65
April, 2019
65
February, 2023
45
October, 2018
38
May, 2022
37
November, 2019
30
December, 2018
27
May, 2020
22
February, 2021
21
January, 2019
16
February, 2018
12
October, 2017
7
July, 2019
6
May, 2021
3
March, 2020
Available data
229
fastq
226
bigWig
224
bam
109
bed narrowPeak
89
tsv
73
tagAlign
33
bed bed3+
27
bed broadPeak
23
bigBed narrowPeak
5
bed bedMethyl
5
bigBed bedMethyl
1
bigBed broadPeak
Organism
103
Homo sapiens
Biosample type
66
tissue
43
in vitro differentiated cells
primary cell
Organ
46
connective tissue
32
pancreas
18
liver
13
musculature of body
3
adipose tissue
Project
109
AMP
Genome assembly (visualization)
109
hg19
88
GRCh38
Lab
109
AMP-T2D consortium
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
1
inconsistent assembly
biosample_type!
primary cell
BIOSAMPLE
ASSAY
109 results
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ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
18
1
1
liver
17
skeletal muscle tissue
13
pancreas
12
adipose tissue
1
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in vitro differentiated cells
adipocyte
42
1
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