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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
109
ChIP-seq
19
ATAC-seq
2
DNase-seq
1
FAIRE-seq
Assay category
109
DNA binding
22
DNA accessibility
Target of assay
82
histone modification
81
histone
44
broad histone mark
36
narrow histone mark
27
transcription factor
5
RNA binding protein
2
chromatin remodeller
Date released
307
November, 2017
168
October, 2019
163
June, 2019
109
August, 2017
103
August, 2021
93
May, 2019
73
November, 2018
72
December, 2017
65
April, 2019
65
February, 2023
45
October, 2018
40
May, 2024
38
May, 2022
37
November, 2019
30
December, 2018
27
May, 2020
22
February, 2021
21
January, 2019
16
February, 2018
12
October, 2017
7
July, 2019
6
May, 2021
3
March, 2020
Available data
793
bam
775
bigWig
641
tsv
229
fastq
131
bed narrowPeak
89
txt
81
tagAlign
34
bed bed3+
27
bed broadPeak
23
bigBed narrowPeak
6
csv
5
bed bedMethyl
5
bigBed bedMethyl
4
bed bedgraph
1
bed bed3
1
bigBed broadPeak
Organism
125
Homo sapiens
Biosample type
74
tissue
43
in vitro differentiated cells
primary cell
14
cell line
Organ
46
connective tissue
32
pancreas
19
liver
13
musculature of body
12
artery
12
blood vessel
12
heart
12
vasculature
8
bone element
8
skeleton
6
limb
3
adipose tissue
Project
131
AMP
Genome assembly (visualization)
131
hg19
110
GRCh38
Lab
131
AMP-T2D consortium
Audit category:
1
inconsistent replicate
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
1
inconsistent assembly
biosample_type!
primary cell
BIOSAMPLE
ASSAY
131 results
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ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
18
1
1
liver
17
skeletal muscle tissue
13
pancreas
12
adipose tissue
1
+ See 11 more…
in vitro differentiated cells
adipocyte
42
1
cell line
smooth muscle cell of the coronary artery
4
8
HepG2
1
iPSC derived cell line
1
See all biosamples
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