Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
313
ChIP-seq
89
total RNA-seq
16
WGBS
12
DNase-seq
5
RRBS
2
ATAC-seq
2
FAIRE-seq
Assay category
313
DNA binding
89
Transcription
21
DNA methylation
16
DNA accessibility
Target of assay
161
histone modification
160
histone
109
transcription factor
93
broad histone mark
66
narrow histone mark
43
control
27
RNA binding protein
16
recombinant protein
9
chromatin remodeller
3
other context
3
other post-translational modification
Date released
667
February, 2021
397
November, 2017
352
August, 2017
315
August, 2021
280
October, 2019
194
May, 2020
193
May, 2021
163
June, 2019
120
July, 2018
117
February, 2023
115
May, 2019
94
December, 2017
87
November, 2018
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
63
March, 2020
61
November, 2019
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
10
November, 2020
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
316
fastq
311
bam
306
bigWig
182
bed narrowPeak
96
bigBed narrowPeak
89
tsv
73
tagAlign
42
bed bed3+
36
bed broadPeak
12
bed bedMethyl
12
bigBed bedMethyl
10
bigBed broadPeak
Organism
432
Homo sapiens
Biosample type
310
tissue
68
in vitro differentiated cells
61
cell line
primary cell
Organ
154
pancreas
126
connective tissue
107
liver
58
adipose tissue
26
musculature of body
15
blood
15
bodily fluid
9
spleen
2
brain
Project
439
AMP
Genome assembly (visualization)
300
hg19
286
GRCh38
Lab
439
AMP-T2D consortium
Audit category:
30
missing controlled_by
Audit category:
16
inconsistent control read length
4
inconsistent control run_type
1
inconsistent assembly
biosample_type!
primary cell
BIOSAMPLE
ASSAY
439 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
WGBS
DNase-seq
RRBS
ATAC-seq
FAIRE-seq
tissue
islet of Langerhans
42
89
1
1
liver
52
3
2
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
pancreas
14
2
1
+ See 8 more…
in vitro differentiated cells
adipocyte
67
1
cell line
HepG2
45
1
GM12878
15
See all biosamples
Download