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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
164
ChIP-seq
3
ATAC-seq
3
DNase-seq
1
RRBS
Assay category
164
DNA binding
6
DNA accessibility
1
DNA methylation
Target of assay
99
histone
99
histone modification
51
narrow histone mark
47
broad histone mark
35
transcription factor
30
control
8
RNA binding protein
4
chromatin remodeller
Date released
359
May, 2021
324
November, 2017
170
February, 2021
148
May, 2020
134
May, 2022
125
August, 2017
110
February, 2023
90
August, 2021
73
September, 2018
71
October, 2019
62
November, 2018
59
September, 2020
55
June, 2019
48
July, 2018
46
December, 2017
43
April, 2018
39
February, 2018
31
July, 2019
28
December, 2018
24
March, 2020
23
January, 2019
21
November, 2019
12
November, 2020
8
January, 2021
7
August, 2020
7
December, 2019
6
January, 2018
5
March, 2023
5
May, 2019
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
Available data
156
bam
156
fastq
128
bigWig
110
bed narrowPeak
32
bigBed narrowPeak
25
tagAlign
22
bed bed3+
14
bed broadPeak
14
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
171
Homo sapiens
Biosample type
tissue
111
in vitro differentiated cells
57
primary cell
3
stem cell
Organ
68
connective tissue
48
epithelium
41
pancreas
15
liver
13
embryo
Project
171
AMP
Genome assembly (visualization)
135
hg19
130
GRCh38
Lab
171
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
18
missing controlled_by
Audit category:
22
inconsistent control read length
inconsistent assembly
1
inconsistent control run_type
biosample_type!
tissue
audit.WARNING.category!
inconsistent assembly
BIOSAMPLE
ASSAY
171 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
RRBS
in vitro differentiated cells
adipocyte
67
1
hepatocyte
15
pancreatic endoderm
9
Posterior foregut
5
definitive endodermal cell
5
+ See 2 more…
primary cell
skeletal muscle myoblast
13
2
1
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
pancreatic acinar cell
1
stem cell
hESC
3
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