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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
ChIP-seq
3
ATAC-seq
3
DNase-seq
3
single cell RNA-seq
1
RRBS
Assay category
120
DNA binding
6
DNA accessibility
3
Transcription
1
DNA methylation
Target of assay
75
histone
75
histone modification
38
narrow histone mark
36
broad histone mark
24
transcription factor
21
control
6
RNA binding protein
3
chromatin remodeller
Date released
359
May, 2021
324
November, 2017
170
February, 2021
148
May, 2020
134
May, 2022
127
August, 2017
110
February, 2023
90
August, 2021
73
September, 2018
72
October, 2019
62
November, 2018
59
September, 2020
55
June, 2019
48
July, 2018
46
December, 2017
43
April, 2018
39
February, 2018
31
July, 2019
28
December, 2018
24
March, 2020
23
January, 2019
21
November, 2019
12
November, 2020
8
January, 2021
7
August, 2020
7
December, 2019
6
January, 2018
5
March, 2023
5
May, 2019
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
Available data
115
bam
115
fastq
97
bigWig
76
bed narrowPeak
26
tagAlign
20
bigBed narrowPeak
15
bed broadPeak
15
bigBed broadPeak
7
bed bed3+
3
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
130
Homo sapiens
Biosample type
tissue
68
in vitro differentiated cells
62
primary cell
Organ
68
connective tissue
42
pancreas
30
epithelium
Project
130
AMP
Genome assembly (visualization)
99
hg19
94
GRCh38
Lab
130
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
17
missing controlled_by
Audit category:
11
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
biosample_type!
tissue
BIOSAMPLE
ASSAY
130 results
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ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RRBS
in vitro differentiated cells
adipocyte
67
1
primary cell
skeletal muscle myoblast
15
2
1
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
pancreatic acinar cell
1
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