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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
133
ChIP-seq
9
ATAC-seq
3
DNase-seq
1
Hi-C
1
RRBS
1
total RNA-seq
Assay category
133
DNA binding
12
DNA accessibility
1
3D chromatin structure
1
DNA methylation
1
Transcription
Target of assay
85
histone
85
histone modification
42
broad histone mark
42
narrow histone mark
25
transcription factor
23
control
7
RNA binding protein
3
chromatin remodeller
Date released
359
May, 2021
324
November, 2017
170
February, 2021
148
May, 2020
134
May, 2022
127
August, 2017
110
February, 2023
90
August, 2021
73
September, 2018
72
October, 2019
62
November, 2018
59
September, 2020
55
June, 2019
48
July, 2018
46
December, 2017
43
April, 2018
39
February, 2018
31
July, 2019
28
December, 2018
24
March, 2020
23
January, 2019
21
November, 2019
12
November, 2020
8
January, 2021
7
August, 2020
7
December, 2019
6
January, 2018
5
March, 2023
5
May, 2019
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
Available data
132
bam
112
fastq
106
bigWig
93
bed narrowPeak
26
tagAlign
20
bigBed narrowPeak
15
bed broadPeak
15
bigBed broadPeak
7
bed bed3+
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
1
tsv
Organism
148
Homo sapiens
Biosample type
tissue
73
in vitro differentiated cells
59
primary cell
16
cell line
Organ
68
connective tissue
57
pancreas
45
epithelium
Project
148
AMP
Genome assembly (visualization)
115
hg19
109
GRCh38
Lab
148
AMP-T2D consortium
Audit category:
21
inconsistent ontology term
Audit category:
17
missing controlled_by
Audit category:
11
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
biosample_type!
tissue
BIOSAMPLE
ASSAY
148 results
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ChIP-seq
ATAC-seq
DNase-seq
Hi-C
RRBS
total RNA-seq
in vitro differentiated cells
adipocyte
67
1
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
primary cell
skeletal muscle myoblast
15
2
1
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
pancreatic acinar cell
1
cell line
EndoC_BH1
13
1
1
1
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