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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
115
ChIP-seq
50
single cell RNA-seq
7
WGBS
6
RRBS
2
RNA microarray
1
DNase-seq
Assay category
115
DNA binding
50
Transcription
13
DNA methylation
1
DNA accessibility
Target of assay
96
histone
96
histone modification
60
broad histone mark
36
narrow histone mark
19
control
Date released
270
August, 2021
205
February, 2023
176
May, 2022
143
February, 2021
129
August, 2017
122
May, 2021
64
October, 2019
59
September, 2020
58
May, 2020
48
March, 2020
47
September, 2023
40
May, 2024
26
July, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
May, 2023
14
November, 2017
10
November, 2020
8
January, 2018
8
October, 2017
7
August, 2020
5
December, 2019
5
March, 2023
4
July, 2018
4
March, 2019
4
October, 2022
2
November, 2019
1
April, 2019
1
August, 2018
1
August, 2022
1
December, 2018
1
November, 2018
1
September, 2018
Available data
bam
287
fastq
277
bigWig
142
bed narrowPeak
98
tsv
85
tagAlign
42
bigBed narrowPeak
41
bed broadPeak
33
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
181
Homo sapiens
Biosample type
164
tissue
16
in vitro differentiated cells
1
primary cell
Organ
54
connective tissue
50
kidney
40
adipose tissue
28
liver
26
musculature of body
20
pancreas
1
epithelium
Project
134
AMP
47
KPMP
Genome assembly (visualization)
24
hg19
Lab
134
AMP-T2D consortium
47
KPMP
Audit category:
4
audit script error
2
inconsistent ontology term
files.file_type!
bam
BIOSAMPLE
ASSAY
181 results
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ChIP-seq
single cell RNA-seq
WGBS
RRBS
RNA microarray
DNase-seq
tissue
kidney
48
subcutaneous abdominal adipose tissue
36
3
liver
23
3
1
skeletal muscle tissue
22
4
islet of Langerhans
20
+ See 4 more…
in vitro differentiated cells
adipocyte
14
cardiomyocytes (cardiac muscle cell)
2
primary cell
skeletal muscle myoblast
1
See all biosamples
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