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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
217
ChIP-seq
89
total RNA-seq
6
RRBS
5
DNase-seq
4
ATAC-seq
3
WGBS
1
FAIRE-seq
Assay category
217
DNA binding
89
Transcription
10
DNA accessibility
9
DNA methylation
Target of assay
155
histone modification
154
histone
83
broad histone mark
70
narrow histone mark
42
control
20
transcription factor
6
RNA binding protein
3
chromatin remodeller
Date released
406
November, 2017
397
May, 2021
341
May, 2020
327
February, 2021
325
August, 2017
313
August, 2021
305
October, 2019
200
February, 2023
199
May, 2022
168
July, 2018
120
May, 2019
92
July, 2019
80
April, 2019
79
December, 2017
79
November, 2018
73
September, 2018
63
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
23
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
15
November, 2020
14
May, 2023
10
December, 2019
9
September, 2017
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
269
fastq
265
bam
255
bigWig
139
bed narrowPeak
89
tsv
77
tagAlign
40
bed broadPeak
40
bigBed narrowPeak
bed bed3+
15
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
Organism
318
Homo sapiens
Biosample type
205
tissue
61
in vitro differentiated cells
59
primary cell
Organ
169
pancreas
114
connective tissue
adipose tissue
51
liver
29
epithelium
26
musculature of body
Project
325
AMP
Genome assembly (visualization)
232
hg19
204
GRCh38
Lab
325
AMP-T2D consortium
Audit category:
17
missing controlled_by
Audit category:
12
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
files.file_type!
bed bed3+
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
325 results
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Clear Filters
ChIP-seq
total RNA-seq
RRBS
DNase-seq
ATAC-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
23
89
1
1
liver
45
1
3
skeletal muscle tissue
22
4
pancreas
14
right lobe of liver
1
1
in vitro differentiated cells
adipocyte
60
1
primary cell
skeletal muscle myoblast
15
1
2
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
pancreatic acinar cell
1
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