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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
237
ChIP-seq
89
total RNA-seq
9
WGBS
6
RRBS
5
DNase-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
237
DNA binding
89
Transcription
15
DNA methylation
8
DNA accessibility
Target of assay
173
histone modification
172
histone
97
broad histone mark
74
narrow histone mark
36
control
28
transcription factor
6
RNA binding protein
3
chromatin remodeller
Date released
681
February, 2021
400
November, 2017
371
May, 2021
349
August, 2017
341
May, 2020
311
August, 2021
273
October, 2019
149
February, 2023
135
July, 2018
119
May, 2022
115
May, 2019
93
July, 2019
80
April, 2019
79
November, 2018
74
October, 2018
60
December, 2017
58
March, 2020
47
September, 2023
45
November, 2019
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
25
June, 2019
23
October, 2017
19
April, 2020
16
April, 2018
16
January, 2021
15
May, 2023
12
September, 2018
9
November, 2020
8
January, 2018
5
March, 2019
5
March, 2023
4
December, 2019
4
September, 2017
2
June, 2018
1
August, 2018
1
August, 2022
1
October, 2022
Available data
258
fastq
255
bigWig
253
bam
125
bed narrowPeak
89
tsv
85
tagAlign
41
bed broadPeak
39
bigBed narrowPeak
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
342
Homo sapiens
Biosample type
258
tissue
61
in vitro differentiated cells
30
primary cell
Organ
169
pancreas
114
connective tissue
53
adipose tissue
51
liver
epithelium
26
musculature of body
Project
349
AMP
Genome assembly (visualization)
226
hg19
199
GRCh38
Lab
349
AMP-T2D consortium
Audit category:
25
missing controlled_by
Audit category:
8
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
files.file_type!
bed bed3+
organ_slims!
epithelium
BIOSAMPLE
ASSAY
349 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
DNase-seq
ATAC-seq
FAIRE-seq
tissue
islet of Langerhans
23
89
1
1
liver
45
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
pancreas
14
+ See 4 more…
in vitro differentiated cells
adipocyte
60
1
primary cell
skeletal muscle myoblast
15
1
2
pancreatic endocrine cell
12
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