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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
139
ChIP-seq
89
total RNA-seq
9
WGBS
6
RRBS
1
DNase-seq
Assay category
139
DNA binding
89
Transcription
15
DNA methylation
1
DNA accessibility
Target of assay
79
histone
79
histone modification
45
broad histone mark
42
control
34
narrow histone mark
18
transcription factor
1
RNA binding protein
Date released
666
February, 2021
314
May, 2020
244
August, 2017
196
August, 2021
168
July, 2018
162
May, 2022
139
May, 2021
126
February, 2023
119
October, 2019
101
July, 2019
93
November, 2017
59
September, 2020
53
March, 2020
49
April, 2018
47
September, 2023
31
October, 2018
27
September, 2018
25
February, 2020
24
November, 2019
23
May, 2019
19
April, 2020
16
January, 2021
15
April, 2019
15
May, 2023
15
November, 2018
14
November, 2020
13
December, 2017
11
October, 2017
9
January, 2019
8
December, 2019
8
June, 2019
7
August, 2020
6
September, 2017
5
December, 2018
5
March, 2019
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
233
fastq
228
bam
224
bigWig
bed narrowPeak
89
tsv
71
tagAlign
41
bigBed narrowPeak
40
bed broadPeak
26
bed bed3+
14
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
243
Homo sapiens
Biosample type
218
tissue
26
primary cell
in vitro differentiated cells
Organ
139
pancreas
54
adipose tissue
54
connective tissue
36
liver
13
musculature of body
12
epithelium
Project
244
AMP
Genome assembly (visualization)
128
hg19
125
GRCh38
Lab
244
AMP-T2D consortium
Audit category:
33
missing controlled_by
files.file_type!
bed narrowPeak
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
244 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
DNase-seq
tissue
islet of Langerhans
24
89
subcutaneous abdominal adipose tissue
35
3
liver
31
3
1
skeletal muscle tissue
9
4
white adipose tissue
12
+ See 3 more…
primary cell
pancreatic endocrine cell
12
pancreatic alpha cell
6
pancreatic beta cell
6
skeletal muscle myoblast
1
1
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