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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ChIP-seq
5
ATAC-seq
2
DNase-seq
1
FAIRE-seq
Assay category
19
DNA binding
8
DNA accessibility
Target of assay
19
histone
19
histone modification
12
broad histone mark
7
narrow histone mark
Date released
254
November, 2017
97
May, 2019
64
April, 2019
64
November, 2018
63
October, 2019
50
December, 2017
45
October, 2018
30
December, 2018
27
August, 2017
23
June, 2019
21
January, 2019
14
September, 2018
6
October, 2017
5
September, 2017
2
July, 2019
Available data
287
fastq
282
bam
272
bigWig
142
bed narrowPeak
89
tsv
85
tagAlign
42
bigBed narrowPeak
41
bed broadPeak
33
bed bed3+
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
21
Homo sapiens
Biosample type
22
tissue
5
primary cell
Organ
17
pancreas
6
liver
3
epithelium
2
adipose tissue
2
connective tissue
Project
27
AMP
Genome assembly (visualization)
27
hg19
25
GRCh38
Lab
27
AMP-T2D consortium
Audit category:
6
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
27 results
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ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
pancreas
12
liver
5
islet of Langerhans
1
1
adipose tissue
1
right lobe of liver
1
+ See 1 more…
primary cell
skeletal muscle myoblast
1
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
See all biosamples
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