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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
214
ChIP-seq
89
total RNA-seq
9
WGBS
6
RRBS
1
DNase-seq
Assay category
214
DNA binding
89
Transcription
15
DNA methylation
1
DNA accessibility
Target of assay
169
histone modification
168
histone
91
broad histone mark
76
narrow histone mark
control
45
transcription factor
6
RNA binding protein
2
chromatin remodeller
Date released
712
February, 2021
390
May, 2021
319
August, 2017
318
May, 2020
307
August, 2021
205
February, 2023
205
October, 2019
200
May, 2022
168
July, 2018
103
July, 2019
64
March, 2020
59
November, 2019
59
September, 2018
59
September, 2020
49
April, 2018
47
September, 2023
31
February, 2018
25
February, 2020
23
December, 2017
23
November, 2017
19
April, 2020
16
January, 2021
15
May, 2023
14
October, 2017
10
December, 2019
10
November, 2020
9
November, 2018
8
January, 2018
7
August, 2020
5
January, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
2
April, 2019
2
October, 2018
1
August, 2022
1
December, 2018
Available data
271
bigWig
256
fastq
251
bam
142
bed narrowPeak
89
tsv
74
tagAlign
bigBed narrowPeak
41
bed broadPeak
31
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
319
Homo sapiens
Biosample type
233
tissue
59
in vitro differentiated cells
27
primary cell
Organ
150
pancreas
108
connective tissue
49
adipose tissue
37
liver
23
musculature of body
14
epithelium
Project
319
AMP
Genome assembly (visualization)
231
hg19
209
GRCh38
Lab
319
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
10
inconsistent control read length
files.file_type!
bigBed narrowPeak
target.investigated_as!
control
BIOSAMPLE
ASSAY
319 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
DNase-seq
tissue
islet of Langerhans
35
89
liver
32
3
1
subcutaneous abdominal adipose tissue
31
3
skeletal muscle tissue
19
4
white adipose tissue
12
+ See 2 more…
in vitro differentiated cells
adipocyte
59
primary cell
pancreatic endocrine cell
12
pancreatic alpha cell
7
pancreatic beta cell
7
skeletal muscle myoblast
1
See all biosamples
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