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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
173
ChIP-seq
5
ATAC-seq
4
DNase-seq
4
RRBS
1
FAIRE-seq
Assay category
173
DNA binding
10
DNA accessibility
4
DNA methylation
Target of assay
123
histone modification
122
histone
61
broad histone mark
60
narrow histone mark
47
transcription factor
8
RNA binding protein
3
chromatin remodeller
3
control
Date released
281
November, 2017
201
October, 2019
187
August, 2017
187
June, 2019
143
May, 2021
97
May, 2019
77
December, 2017
72
May, 2020
71
November, 2018
65
April, 2019
46
September, 2018
45
August, 2021
45
February, 2023
45
October, 2018
39
May, 2022
39
November, 2019
30
December, 2018
29
February, 2021
26
July, 2019
21
January, 2019
17
March, 2020
16
February, 2018
13
October, 2017
7
September, 2017
3
January, 2018
3
March, 2019
3
October, 2022
2
November, 2020
1
May, 2023
Available data
270
bigWig
255
fastq
252
bam
142
bed narrowPeak
tsv
42
bigBed narrowPeak
41
bed broadPeak
38
tagAlign
33
bed bed3+
15
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
Organism
181
Homo sapiens
Biosample type
91
tissue
49
in vitro differentiated cells
47
primary cell
Organ
70
pancreas
64
connective tissue
20
liver
17
epithelium
15
adipose tissue
15
musculature of body
Project
187
AMP
Genome assembly (visualization)
187
hg19
160
GRCh38
Lab
187
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
files.file_type!
tsv
BIOSAMPLE
ASSAY
187 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
RRBS
FAIRE-seq
tissue
islet of Langerhans
27
1
1
liver
18
1
skeletal muscle tissue
13
2
pancreas
12
white adipose tissue
12
+ See 4 more…
in vitro differentiated cells
adipocyte
48
1
primary cell
skeletal muscle myoblast
15
2
1
pancreatic endocrine cell
12
pancreatic alpha cell
7
1
pancreatic beta cell
7
1
pancreatic acinar cell
1
See all biosamples
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