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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
116
ChIP-seq
5
ATAC-seq
4
DNase-seq
1
FAIRE-seq
Assay category
116
DNA binding
10
DNA accessibility
Target of assay
98
histone modification
97
histone
53
broad histone mark
43
narrow histone mark
18
transcription factor
7
RNA binding protein
1
chromatin remodeller
Date released
294
November, 2017
210
June, 2019
189
October, 2019
133
May, 2021
126
August, 2017
106
August, 2021
97
May, 2019
68
November, 2018
65
April, 2019
65
February, 2023
61
December, 2017
46
September, 2018
44
October, 2018
38
May, 2022
37
November, 2019
30
December, 2018
27
May, 2020
23
February, 2021
21
January, 2019
14
February, 2018
12
October, 2017
7
July, 2019
5
September, 2017
3
March, 2020
2
November, 2020
Available data
271
fastq
266
bam
256
bigWig
126
bed narrowPeak
89
tsv
85
tagAlign
41
bed broadPeak
36
bigBed narrowPeak
29
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
120
Homo sapiens
Biosample type
61
tissue
37
in vitro differentiated cells
28
primary cell
Organ
41
pancreas
40
connective tissue
17
liver
13
epithelium
13
musculature of body
3
adipose tissue
Project
126
AMP
Genome assembly (visualization)
126
hg19
102
GRCh38
Lab
126
AMP-T2D consortium
Audit category:
1
missing controlled_by
Audit category:
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
126 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
18
1
1
liver
16
skeletal muscle tissue
13
pancreas
8
adipose tissue
1
+ See 3 more…
in vitro differentiated cells
adipocyte
36
1
primary cell
skeletal muscle myoblast
13
2
pancreatic alpha cell
5
1
pancreatic beta cell
5
1
pancreatic acinar cell
1
See all biosamples
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