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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
119
ChIP-seq
5
ATAC-seq
4
DNase-seq
1
FAIRE-seq
Assay category
119
DNA binding
10
DNA accessibility
Target of assay
95
histone modification
94
histone
48
broad histone mark
45
narrow histone mark
24
transcription factor
7
RNA binding protein
3
chromatin remodeller
Date released
313
November, 2017
189
October, 2019
169
June, 2019
133
May, 2021
129
August, 2017
106
August, 2021
91
May, 2019
73
November, 2018
72
December, 2017
65
April, 2019
65
February, 2023
46
September, 2018
45
October, 2018
38
May, 2022
37
November, 2019
30
December, 2018
27
May, 2020
23
February, 2021
21
January, 2019
16
February, 2018
12
October, 2017
7
July, 2019
5
September, 2017
3
March, 2020
2
November, 2020
Available data
285
fastq
282
bam
259
bigWig
129
bed narrowPeak
89
tsv
70
tagAlign
42
bigBed narrowPeak
33
bed bed3+
28
bed broadPeak
15
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
Organism
123
Homo sapiens
Biosample type
53
tissue
43
in vitro differentiated cells
33
primary cell
Organ
49
pancreas
46
connective tissue
18
liver
17
epithelium
musculature of body
3
adipose tissue
Project
129
AMP
Genome assembly (visualization)
129
hg19
118
GRCh38
Lab
129
AMP-T2D consortium
Audit category:
1
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
129 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
18
1
1
liver
17
pancreas
12
adipose tissue
1
right lobe of liver
1
+ See 2 more…
in vitro differentiated cells
adipocyte
42
1
primary cell
skeletal muscle myoblast
14
2
pancreatic alpha cell
7
1
pancreatic beta cell
7
1
pancreatic acinar cell
1
See all biosamples
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