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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
89
total RNA-seq
5
ATAC-seq
4
DNase-seq
2
WGBS
1
FAIRE-seq
Assay category
218
DNA binding
89
Transcription
10
DNA accessibility
2
DNA methylation
Target of assay
160
histone modification
159
histone
84
broad histone mark
74
narrow histone mark
47
transcription factor
11
control
8
RNA binding protein
3
chromatin remodeller
Date released
554
February, 2021
355
November, 2017
319
August, 2017
304
May, 2021
283
May, 2020
216
October, 2019
210
June, 2019
164
July, 2018
97
May, 2019
85
July, 2019
80
November, 2018
72
December, 2017
72
September, 2018
65
April, 2019
55
August, 2021
49
April, 2018
47
October, 2018
31
February, 2018
31
November, 2019
30
December, 2018
26
January, 2019
22
October, 2017
20
March, 2020
20
May, 2022
8
January, 2018
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
February, 2023
3
June, 2018
3
September, 2020
Available data
287
fastq
282
bam
272
bigWig
142
bed narrowPeak
89
tsv
85
tagAlign
42
bigBed narrowPeak
41
bed broadPeak
33
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
312
Homo sapiens
Biosample type
211
tissue
62
in vitro differentiated cells
46
primary cell
Organ
163
pancreas
86
connective tissue
38
liver
24
adipose tissue
17
epithelium
15
musculature of body
Project
319
AMP
Genome assembly (visualization)
270
hg19
247
GRCh38
Lab
319
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
BIOSAMPLE
ASSAY
319 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
30
89
1
1
liver
37
skeletal muscle tissue
15
pancreas
13
white adipose tissue
12
+ See 4 more…
in vitro differentiated cells
adipocyte
61
1
primary cell
skeletal muscle myoblast
15
2
pancreatic endocrine cell
12
pancreatic alpha cell
7
1
pancreatic beta cell
7
1
pancreatic acinar cell
1
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