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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
165
ChIP-seq
89
total RNA-seq
5
ATAC-seq
4
DNase-seq
2
WGBS
1
FAIRE-seq
Assay category
165
DNA binding
89
Transcription
10
DNA accessibility
2
DNA methylation
Target of assay
117
histone modification
116
histone
58
narrow histone mark
57
broad histone mark
47
transcription factor
8
RNA binding protein
3
chromatin remodeller
1
control
Date released
551
February, 2021
334
November, 2017
303
May, 2021
266
August, 2017
260
May, 2020
210
June, 2019
207
October, 2019
164
July, 2018
97
May, 2019
85
July, 2019
80
November, 2018
72
December, 2017
72
September, 2018
65
April, 2019
49
April, 2018
47
August, 2021
47
October, 2018
31
February, 2018
31
November, 2019
30
December, 2018
26
January, 2019
20
March, 2020
20
May, 2022
14
October, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
February, 2023
3
June, 2018
3
September, 2020
Available data
280
fastq
275
bam
266
bigWig
136
bed narrowPeak
89
tsv
78
tagAlign
36
bigBed narrowPeak
35
bed broadPeak
33
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
266
Homo sapiens
Biosample type
172
tissue
48
in vitro differentiated cells
46
primary cell
Organ
153
pancreas
65
connective tissue
18
liver
17
adipose tissue
17
epithelium
13
musculature of body
Project
266
AMP
Genome assembly (visualization)
264
hg19
241
GRCh38
Lab
266
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
BIOSAMPLE
ASSAY
266 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
27
89
1
1
liver
17
skeletal muscle tissue
13
white adipose tissue
12
pancreas
6
+ See 4 more…
in vitro differentiated cells
adipocyte
47
1
primary cell
skeletal muscle myoblast
15
2
pancreatic endocrine cell
12
pancreatic alpha cell
7
1
pancreatic beta cell
7
1
pancreatic acinar cell
1
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