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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
174
ChIP-seq
89
total RNA-seq
5
ATAC-seq
4
RRBS
4
WGBS
3
DNase-seq
1
FAIRE-seq
Assay category
174
DNA binding
89
Transcription
9
DNA accessibility
8
DNA methylation
Target of assay
97
histone modification
96
histone
50
narrow histone mark
47
transcription factor
45
broad histone mark
30
control
8
RNA binding protein
3
chromatin remodeller
Date released
324
November, 2017
280
August, 2017
94
December, 2017
88
November, 2018
76
February, 2023
73
September, 2018
60
October, 2018
50
July, 2018
45
February, 2021
44
April, 2018
41
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
24
May, 2022
17
October, 2017
11
September, 2017
7
August, 2020
5
January, 2018
4
August, 2018
3
June, 2018
1
March, 2019
Available data
280
fastq
275
bam
266
bigWig
136
bed narrowPeak
89
tsv
78
tagAlign
36
bigBed narrowPeak
35
bed broadPeak
33
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
280
Homo sapiens
Biosample type
168
tissue
58
primary cell
54
in vitro differentiated cells
Organ
161
pancreas
72
connective tissue
29
epithelium
28
liver
18
adipose tissue
2
musculature of body
Project
280
AMP
Genome assembly (visualization)
249
hg19
243
GRCh38
Lab
280
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
BIOSAMPLE
ASSAY
280 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
RRBS
WGBS
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
22
89
1
1
liver
25
1
1
white adipose tissue
12
pancreas
7
adipose tissue
2
3
+ See 3 more…
primary cell
skeletal muscle myoblast
15
1
1
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
pancreatic acinar cell
1
in vitro differentiated cells
adipocyte
53
1
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