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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
180
ChIP-seq
5
ATAC-seq
4
DNase-seq
1
FAIRE-seq
Assay category
180
DNA binding
10
DNA accessibility
Target of assay
145
histone modification
144
histone
79
broad histone mark
64
narrow histone mark
24
transcription factor
11
control
7
RNA binding protein
3
chromatin remodeller
Date released
336
November, 2017
210
June, 2019
198
October, 2019
190
August, 2017
134
May, 2021
114
August, 2021
97
May, 2019
73
November, 2018
72
December, 2017
65
April, 2019
65
February, 2023
50
May, 2020
46
September, 2018
45
October, 2018
38
May, 2022
37
November, 2019
30
December, 2018
26
February, 2021
21
January, 2019
20
October, 2017
16
February, 2018
7
July, 2019
5
September, 2017
3
March, 2020
2
November, 2020
Available data
287
fastq
282
bam
272
bigWig
142
bed narrowPeak
89
tsv
85
tagAlign
42
bigBed narrowPeak
41
bed broadPeak
33
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
183
Homo sapiens
Biosample type
99
tissue
57
in vitro differentiated cells
34
primary cell
Organ
67
connective tissue
53
pancreas
38
liver
17
epithelium
15
musculature of body
10
adipose tissue
Project
190
AMP
Genome assembly (visualization)
143
hg19
118
GRCh38
Lab
190
AMP-T2D consortium
Audit category:
1
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
BIOSAMPLE
ASSAY
190 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
liver
37
islet of Langerhans
21
1
1
skeletal muscle tissue
15
pancreas
13
subcutaneous abdominal adipose tissue
8
+ See 3 more…
in vitro differentiated cells
adipocyte
56
1
primary cell
skeletal muscle myoblast
15
2
pancreatic alpha cell
7
1
pancreatic beta cell
7
1
pancreatic acinar cell
1
See all biosamples
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