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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
311
ChIP-seq
89
total RNA-seq
ATAC-seq
9
WGBS
6
RRBS
5
DNase-seq
1
FAIRE-seq
Assay category
311
DNA binding
89
Transcription
15
DNA methylation
6
DNA accessibility
Target of assay
211
histone modification
210
histone
119
broad histone mark
90
narrow histone mark
53
control
47
transcription factor
8
RNA binding protein
3
chromatin remodeller
Date released
693
February, 2021
406
August, 2017
406
November, 2017
365
May, 2021
292
October, 2019
243
August, 2021
241
May, 2020
218
June, 2019
168
July, 2018
123
May, 2022
120
May, 2019
102
February, 2023
102
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
30
January, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
November, 2020
15
October, 2017
10
December, 2019
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
August, 2022
1
March, 2019
Available data
291
fastq
285
bam
273
bigWig
143
bed narrowPeak
99
tagAlign
89
tsv
44
bed broadPeak
43
bigBed narrowPeak
33
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
414
Homo sapiens
Biosample type
297
tissue
68
in vitro differentiated cells
56
primary cell
Organ
185
pancreas
124
connective tissue
56
adipose tissue
53
liver
26
epithelium
26
musculature of body
15
brain
Project
421
AMP
Genome assembly (visualization)
277
hg19
250
GRCh38
Lab
421
AMP-T2D consortium
Audit category:
43
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
month_released!
March, 2020
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
421 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
42
89
1
1
liver
48
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
brain
15
+ See 4 more…
in vitro differentiated cells
adipocyte
67
1
primary cell
skeletal muscle myoblast
15
1
2
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic endocrine cell
12
See all biosamples
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