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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
110
ChIP-seq
89
total RNA-seq
5
ATAC-seq
4
DNase-seq
2
WGBS
1
FAIRE-seq
Assay category
110
DNA binding
89
Transcription
10
DNA accessibility
2
DNA methylation
Target of assay
123
histone modification
122
histone
broad histone mark
60
narrow histone mark
47
transcription factor
8
RNA binding protein
3
chromatin remodeller
1
control
Date released
551
February, 2021
289
November, 2017
260
May, 2020
239
May, 2021
211
August, 2017
202
June, 2019
164
July, 2018
155
October, 2019
85
July, 2019
80
November, 2018
57
December, 2017
55
September, 2018
49
April, 2018
39
August, 2021
39
May, 2019
30
December, 2018
28
April, 2019
28
October, 2018
25
November, 2019
23
February, 2018
22
January, 2019
March, 2020
20
May, 2022
20
May, 2024
9
October, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
February, 2023
3
June, 2018
3
September, 2020
Available data
238
fastq
233
bam
211
bigWig
89
tsv
86
bed narrowPeak
40
tagAlign
27
bed bed3+
24
bigBed narrowPeak
19
bed broadPeak
9
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
209
Homo sapiens
Biosample type
145
tissue
36
in vitro differentiated cells
30
primary cell
Organ
131
pancreas
53
connective tissue
17
adipose tissue
11
epithelium
11
liver
5
musculature of body
Project
211
AMP
Genome assembly (visualization)
209
hg19
198
GRCh38
Lab
211
AMP-T2D consortium
Audit category:
34
missing controlled_by
Audit category:
13
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
month_released!
March, 2020
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
211 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
17
89
1
1
white adipose tissue
12
liver
10
skeletal muscle tissue
5
pancreas
4
+ See 4 more…
in vitro differentiated cells
adipocyte
35
1
primary cell
skeletal muscle myoblast
9
2
pancreatic endocrine cell
8
pancreatic alpha cell
4
1
pancreatic beta cell
4
1
pancreatic acinar cell
1
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