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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
304
ChIP-seq
89
total RNA-seq
9
WGBS
6
RRBS
5
DNase-seq
2
ATAC-seq
1
FAIRE-seq
1
Hi-C
Assay category
304
DNA binding
89
Transcription
15
DNA methylation
8
DNA accessibility
1
3D chromatin structure
Target of assay
185
histone modification
184
histone
103
broad histone mark
80
narrow histone mark
75
transcription factor
42
control
10
RNA binding protein
5
chromatin remodeller
Date released
683
February, 2021
400
November, 2017
382
August, 2017
373
May, 2021
341
May, 2020
313
August, 2021
279
October, 2019
198
June, 2019
153
February, 2023
135
July, 2018
120
May, 2022
115
May, 2019
95
July, 2019
88
November, 2018
80
April, 2019
75
December, 2017
74
October, 2018
58
March, 2020
47
September, 2023
45
November, 2019
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
April, 2018
16
January, 2021
15
May, 2023
12
September, 2018
10
November, 2020
8
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
4
December, 2019
2
June, 2018
1
August, 2018
1
August, 2022
1
October, 2022
Available data
293
fastq
287
bam
285
bigWig
155
bed narrowPeak
89
tsv
85
tagAlign
69
bigBed narrowPeak
41
bed broadPeak
33
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
410
Homo sapiens
Biosample type
291
tissue
68
in vitro differentiated cells
30
primary cell
28
cell line
Organ
188
pancreas
125
connective tissue
57
adipose tissue
55
liver
epithelium
27
blood
27
bodily fluid
26
musculature of body
7
spleen
Project
417
AMP
Genome assembly (visualization)
289
hg19
262
GRCh38
Lab
417
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
39
missing controlled_by
Audit category:
12
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
organ_slims!
epithelium
BIOSAMPLE
ASSAY
417 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
DNase-seq
ATAC-seq
FAIRE-seq
Hi-C
tissue
islet of Langerhans
42
89
1
1
liver
48
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
pancreas
14
+ See 5 more…
in vitro differentiated cells
adipocyte
67
1
primary cell
skeletal muscle myoblast
15
1
2
pancreatic endocrine cell
12
cell line
GM12878
27
HepG2
1
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