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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
296
ChIP-seq
182
total RNA-seq
108
ATAC-seq
9
WGBS
6
RRBS
5
DNase-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
single cell RNA-seq
Assay category
182
Transcription
Date released
545
February, 2021
190
May, 2020
182
May, 2021
120
July, 2018
93
February, 2023
89
August, 2017
74
August, 2021
44
July, 2019
30
October, 2019
26
May, 2022
26
September, 2018
25
February, 2020
20
November, 2019
16
September, 2020
15
February, 2018
15
March, 2020
6
April, 2018
5
December, 2019
5
January, 2019
4
November, 2020
2
October, 2018
1
May, 2023
Available data
165
fastq
93
tsv
89
bam
89
bigWig
4
txt
Organism
182
Homo sapiens
Biosample type
102
tissue
76
primary cell
4
in vitro differentiated cells
Organ
131
pancreas
39
epithelium
4
bone element
4
connective tissue
4
eye
4
skeleton
Project
101
AMP
76
HPAP
5
T1D
Genome assembly (visualization)
89
GRCh38
89
hg19
Lab
101
AMP-T2D consortium
76
Klaus Kaestner, Upenn
5
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
BIOSAMPLE
ASSAY
182 results
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Clear Filters
total RNA-seq
tissue
islet of Langerhans
94
pigmented layer of retina
2
retina
2
acetabular part of hip bone
1
ilium
1
+ See 2 more…
primary cell
exocrine cell
39
pancreatic alpha cell
27
pancreatic beta cell
10
in vitro differentiated cells
immature adipocyte
2
adipocyte
1
preadipocyte
1
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