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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
126
total RNA-seq
11
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
snATAC-seq
Assay category
126
Transcription
13
DNA accessibility
Date released
153
May, 2021
134
May, 2022
99
February, 2023
59
September, 2020
47
September, 2023
45
February, 2021
45
May, 2020
19
April, 2020
16
January, 2021
7
August, 2020
7
March, 2020
5
March, 2023
3
October, 2022
0
August, 2017
Available data
76
fastq
45
bam
45
bigWig
45
tsv
Organism
144
Homo sapiens
Biosample type
121
primary cell
18
tissue
5
cell line
Organ
55
pancreas
37
epithelium
Project
AMP
76
HPAP
68
T1D
Genome assembly (visualization)
45
GRCh38
45
hg19
Lab
76
Klaus Kaestner, Upenn
68
Kyle Gaulton, UCSD
Audit category:
4
inconsistent ontology term
award.project!
AMP
BIOSAMPLE
ASSAY
144 results
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total RNA-seq
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
snATAC-seq
primary cell
exocrine cell
39
pancreatic alpha cell
27
pancreatic beta cell
10
B cell
2
CD8-positive, alpha-beta T cell
2
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tissue
islet of Langerhans
5
11
2
cell line
EndoC_BH1
3
2
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