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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
ChIP-seq
12
ATAC-seq
4
total RNA-seq
1
DNase-seq
Assay category
51
DNA binding
13
DNA accessibility
4
Transcription
Target of assay
37
histone
37
histone modification
22
transcription factor
20
broad histone mark
narrow histone mark
8
control
4
RNA binding protein
2
chromatin remodeller
Date released
121
May, 2021
52
August, 2017
35
August, 2021
31
February, 2018
30
December, 2017
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
42
bam
42
fastq
39
bigWig
33
bed narrowPeak
11
bed bed3+
10
tagAlign
5
bed bed3
3
bed bedgraph
3
txt
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
68
Homo sapiens
Biosample type
329
tissue
125
primary cell
68
in vitro differentiated cells
6
cell line
Organ
65
connective tissue
Project
68
AMP
Genome assembly (visualization)
49
hg19
37
GRCh38
Lab
65
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
Audit category:
5
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
6
inconsistent control read length
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
68 results
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ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
51
1
1
1
chondrocyte
5
immature adipocyte
2
2
preadipocyte
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
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