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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
ChIP-seq
13
total RNA-seq
10
RRBS
4
Hi-C
3
ATAC-seq
3
DNase-seq
3
single cell RNA-seq
2
small RNA-seq
Assay category
120
DNA binding
18
Transcription
10
DNA methylation
6
DNA accessibility
4
3D chromatin structure
Target of assay
75
histone
75
histone modification
38
narrow histone mark
36
broad histone mark
24
control
24
transcription factor
6
RNA binding protein
3
chromatin remodeller
Date released
359
May, 2021
324
November, 2017
170
February, 2021
148
May, 2020
134
May, 2022
127
August, 2017
110
February, 2023
90
August, 2021
73
September, 2018
72
October, 2019
62
November, 2018
59
September, 2020
55
June, 2019
48
July, 2018
46
December, 2017
43
April, 2018
39
February, 2018
31
July, 2019
28
December, 2018
24
March, 2020
23
January, 2019
21
November, 2019
12
November, 2020
8
January, 2021
7
August, 2020
7
December, 2019
6
January, 2018
5
March, 2023
5
May, 2019
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
Available data
130
bam
116
bigWig
112
fastq
76
bed narrowPeak
26
tagAlign
20
bigBed narrowPeak
18
tsv
15
bed broadPeak
15
bigBed broadPeak
11
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
Organism
158
Homo sapiens
Biosample type
tissue
90
primary cell
68
in vitro differentiated cells
Organ
76
connective tissue
42
epithelium
41
pancreas
7
brain
7
kidney
5
heart
5
vasculature
4
blood vessel
3
musculature of body
2
adipose tissue
2
artery
2
liver
1
eye
1
pericardium
Project
158
AMP
Genome assembly (visualization)
127
hg19
109
GRCh38
Lab
158
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
17
missing controlled_by
Audit category:
11
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
biosample_type!
tissue
BIOSAMPLE
ASSAY
158 results
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ChIP-seq
total RNA-seq
RRBS
Hi-C
ATAC-seq
DNase-seq
single cell RNA-seq
small RNA-seq
primary cell
skeletal muscle myoblast
15
1
1
2
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
cerebellar granule cell
2
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in vitro differentiated cells
adipocyte
67
1
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