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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
181
ChIP-seq
133
total RNA-seq
18
small RNA-seq
11
ATAC-seq
11
WGBS
4
DNase-seq
3
FAIRE-seq
3
single cell RNA-seq
Assay category
181
DNA binding
154
Transcription
18
DNA accessibility
11
DNA methylation
Target of assay
103
histone modification
102
histone
52
narrow histone mark
49
broad histone mark
47
transcription factor
34
control
8
RNA binding protein
3
chromatin remodeller
Date released
572
February, 2021
392
November, 2017
283
May, 2020
282
August, 2017
277
May, 2021
250
October, 2019
218
June, 2019
164
July, 2018
120
May, 2019
94
December, 2017
87
November, 2018
82
July, 2019
79
April, 2019
76
October, 2018
72
September, 2018
59
November, 2019
49
April, 2018
49
August, 2021
39
February, 2018
34
December, 2018
30
January, 2019
24
May, 2022
16
March, 2020
15
October, 2017
11
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
1
March, 2019
Available data
364
bam
357
bigWig
287
fastq
154
tsv
149
bed narrowPeak
85
tagAlign
44
bigBed narrowPeak
41
bed broadPeak
37
bed bed3+
29
bed bedMethyl
29
bigBed bedMethyl
15
bigBed broadPeak
4
hdf5
Organism
357
Homo sapiens
Biosample type
234
tissue
76
primary cell
54
in vitro differentiated cells
Organ
172
pancreas
87
connective tissue
34
epithelium
33
liver
29
adipose tissue
21
heart
13
brain
9
blood vessel
9
vasculature
7
kidney
5
musculature of body
3
artery
1
limb
1
pericardium
Project
364
AMP
Genome assembly (visualization)
328
GRCh38
324
hg19
Lab
364
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
BIOSAMPLE
ASSAY
364 results
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Clear Filters
ChIP-seq
total RNA-seq
small RNA-seq
ATAC-seq
WGBS
DNase-seq
FAIRE-seq
single cell RNA-seq
tissue
islet of Langerhans
22
89
1
1
liver
25
2
1
pancreas
14
white adipose tissue
12
heart left ventricle
2
2
2
+ See 25 more…
primary cell
skeletal muscle myoblast
15
1
2
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
cerebellar granule cell
2
+ See 14 more…
in vitro differentiated cells
adipocyte
53
1
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