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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
277
total RNA-seq
200
ChIP-seq
50
ATAC-seq
4
DNase-seq
4
RRBS
1
FAIRE-seq
Assay category
277
Transcription
200
DNA binding
55
DNA accessibility
4
DNA methylation
Target of assay
150
histone modification
149
histone
87
narrow histone mark
61
broad histone mark
47
transcription factor
8
RNA binding protein
3
chromatin remodeller
3
control
Date released
574
February, 2021
316
May, 2021
281
November, 2017
276
August, 2017
260
May, 2020
217
October, 2019
187
June, 2019
164
July, 2018
97
May, 2019
91
July, 2019
77
December, 2017
72
September, 2018
71
November, 2018
65
April, 2019
60
August, 2021
59
November, 2019
49
April, 2018
47
October, 2018
45
February, 2023
39
May, 2022
32
March, 2020
31
February, 2018
30
December, 2018
26
January, 2019
13
October, 2017
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
January, 2018
3
June, 2018
3
March, 2019
3
October, 2022
1
May, 2023
Available data
530
bigWig
512
bam
277
tsv
255
fastq
169
bed narrowPeak
65
tagAlign
42
bigBed narrowPeak
41
bed broadPeak
33
bed bed3+
15
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
Organism
530
Homo sapiens
Biosample type
350
tissue
137
primary cell
49
in vitro differentiated cells
Organ
190
liver
159
pancreas
64
connective tissue
17
epithelium
15
adipose tissue
15
musculature of body
Project
491
AMP
45
T1D
Genome assembly (visualization)
536
hg19
456
GRCh38
Lab
491
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
BIOSAMPLE
ASSAY
536 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
RRBS
FAIRE-seq
tissue
liver
143
45
1
islet of Langerhans
89
27
1
1
skeletal muscle tissue
13
2
pancreas
12
white adipose tissue
12
+ See 4 more…
primary cell
skeletal muscle myoblast
15
2
1
pancreatic endocrine cell
12
pancreatic alpha cell
7
1
pancreatic beta cell
7
1
B cell
2
2
+ See 25 more…
in vitro differentiated cells
adipocyte
48
1
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