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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
ChIP-seq
2
DNase-seq
1
ATAC-seq
Assay category
42
DNA binding
3
DNA accessibility
Target of assay
40
histone
40
histone modification
24
broad histone mark
16
narrow histone mark
2
RNA binding protein
2
transcription factor
1
chromatin remodeller
Date released
187
June, 2019
70
November, 2017
41
August, 2017
9
November, 2018
9
October, 2019
4
October, 2017
1
March, 2019
1
November, 2020
Available data
304
fastq
297
bam
286
bigWig
154
bed narrowPeak
99
tagAlign
89
tsv
48
bigBed narrowPeak
45
bed broadPeak
33
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
39
Homo sapiens
Biosample type
30
tissue
14
primary cell
1
in vitro differentiated cells
Organ
13
musculature of body
13
pancreas
3
brain
2
connective tissue
1
adipose tissue
Project
45
AMP
Genome assembly (visualization)
45
hg19
23
GRCh38
Lab
44
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
2
missing controlled_by
Audit category:
2
inconsistent assembly
BIOSAMPLE
ASSAY
45 results
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ChIP-seq
DNase-seq
ATAC-seq
tissue
skeletal muscle tissue
13
islet of Langerhans
6
1
pancreas
6
brain
3
subcutaneous abdominal adipose tissue
1
primary cell
skeletal muscle myoblast
13
1
in vitro differentiated cells
adipocyte
1
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