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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
ChIP-seq
91
total RNA-seq
5
ATAC-seq
2
DNase-seq
2
WGBS
Assay category
196
DNA binding
91
Transcription
7
DNA accessibility
2
DNA methylation
Target of assay
133
histone modification
132
histone
68
broad histone mark
63
narrow histone mark
61
transcription factor
18
RNA binding protein
3
chromatin remodeller
2
control
Date released
568
February, 2021
280
November, 2017
276
May, 2021
249
August, 2017
210
June, 2019
207
May, 2020
207
October, 2019
164
July, 2018
105
August, 2021
96
May, 2019
79
July, 2019
79
November, 2018
77
December, 2017
72
September, 2018
64
April, 2019
57
November, 2019
49
April, 2018
47
October, 2018
35
February, 2023
31
February, 2018
30
December, 2018
26
January, 2019
16
March, 2020
14
October, 2017
12
May, 2023
7
August, 2020
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
3
September, 2020
2
March, 2019
1
March, 2023
Available data
296
bam
294
bigWig
282
fastq
163
bed narrowPeak
91
tsv
83
bigBed narrowPeak
33
bed bed3+
19
bed broadPeak
17
tagAlign
13
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
290
Homo sapiens
Biosample type
203
tissue
49
in vitro differentiated cells
44
primary cell
Organ
194
pancreas
70
connective tissue
21
adipose tissue
19
epithelium
19
liver
Project
296
AMP
Genome assembly (visualization)
323
hg19
296
GRCh38
Lab
296
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
17
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
BIOSAMPLE
ASSAY
296 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
tissue
islet of Langerhans
21
89
1
body of pancreas
25
liver
18
endocrine pancreas
14
pancreas
13
+ See 5 more…
in vitro differentiated cells
adipocyte
48
1
primary cell
skeletal muscle myoblast
13
pancreatic endocrine cell
12
pancreatic alpha cell
7
1
pancreatic beta cell
7
1
pancreatic acinar cell
2
1
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