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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
ChIP-seq
14
total RNA-seq
13
ATAC-seq
9
WGBS
4
pCHi-C
3
DNase-seq
2
RRBS
Assay category
187
DNA binding
16
DNA accessibility
14
Transcription
11
DNA methylation
Target of assay
101
histone
101
histone modification
86
control
51
broad histone mark
50
narrow histone mark
Date released
259
August, 2021
161
May, 2022
160
February, 2023
141
February, 2021
135
August, 2017
125
November, 2017
97
October, 2019
83
May, 2021
81
May, 2020
59
September, 2020
47
September, 2023
40
May, 2024
32
March, 2020
31
June, 2019
29
October, 2018
25
February, 2020
23
May, 2019
19
April, 2020
17
December, 2017
17
July, 2019
17
November, 2018
16
January, 2021
15
April, 2019
14
May, 2023
10
November, 2020
10
October, 2017
8
February, 2018
7
August, 2020
5
December, 2018
5
December, 2019
5
January, 2018
5
March, 2023
4
January, 2019
4
July, 2018
4
September, 2017
2
March, 2019
2
November, 2019
1
August, 2018
1
August, 2022
1
October, 2022
1
September, 2018
Available data
73
bam
56
tagAlign
32
fastq
2
bed bedMethyl
2
bigBed bedMethyl
2
bigWig
Organism
231
Homo sapiens
Biosample type
183
tissue
20
primary cell
19
in vitro differentiated cells
10
cell line
Organ
62
connective tissue
42
adipose tissue
39
pancreas
34
liver
21
eye
20
epithelium
17
limb
11
musculature of body
11
nerve
10
blood vessel
10
vasculature
8
brain
8
kidney
5
artery
5
vein
4
gonad
4
ovary
1
lymph node
1
pituitary gland
1
skin of body
Project
232
AMP
Genome assembly (visualization)
hg19
456
GRCh38
Lab
232
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
assembly!
hg19
BIOSAMPLE
ASSAY
232 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
pCHi-C
DNase-seq
RRBS
tissue
islet of Langerhans
36
14
13
4
subcutaneous abdominal adipose tissue
35
3
liver
30
3
skeletal muscle tissue
9
2
tibial nerve
11
+ See 14 more…
primary cell
pancreatic alpha cell
6
pancreatic beta cell
6
endothelial cell of umbilical vein
5
epithelial cell of proximal tubule
1
kidney glomerular epithelial cell
1
+ See 1 more…
in vitro differentiated cells
adipocyte
19
cell line
Panc1
7
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
See all biosamples
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