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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
50
ChIP-seq
4
ATAC-seq
4
DNase-seq
2
total RNA-seq
1
FAIRE-seq
1
Hi-C
Assay category
50
DNA binding
9
DNA accessibility
2
Transcription
1
3D chromatin structure
Target of assay
35
histone
35
histone modification
18
broad histone mark
17
narrow histone mark
15
control
Date released
80
May, 2022
61
September, 2018
51
February, 2023
33
April, 2018
33
July, 2018
33
October, 2019
29
August, 2017
20
June, 2019
19
December, 2017
19
September, 2020
13
July, 2019
7
August, 2020
6
December, 2019
6
February, 2021
6
November, 2017
5
May, 2019
5
May, 2021
5
September, 2017
4
August, 2021
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
1
March, 2020
Available data
59
bam
40
bigWig
37
bed narrowPeak
29
fastq
16
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
2
tsv
1
hic
1
tar
Organism
62
Homo sapiens
Biosample type
62
primary cell
cell line
Organ
191
pancreas
129
connective tissue
86
brain
69
limb
62
epithelium
61
liver
58
adipose tissue
47
blood vessel
47
vasculature
42
nerve
26
artery
26
musculature of body
21
eye
21
vein
15
kidney
8
heart
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
skin of body
Project
62
AMP
Genome assembly (visualization)
42
hg19
38
GRCh38
Lab
62
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
Audit category:
4
inconsistent control read length
biosample_type!
cell line
BIOSAMPLE
ASSAY
62 results
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ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
FAIRE-seq
Hi-C
primary cell
endothelial cell of umbilical vein
17
2
1
1
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
epithelial cell of proximal tubule
7
kidney glomerular epithelial cell
1
1
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