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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
114
ChIP-seq
89
total RNA-seq
4
ATAC-seq
3
DNase-seq
1
FAIRE-seq
Assay category
114
DNA binding
89
Transcription
8
DNA accessibility
Target of assay
77
histone modification
76
histone
39
narrow histone mark
37
broad histone mark
24
control
13
transcription factor
4
RNA binding protein
1
chromatin remodeller
Date released
392
November, 2017
283
May, 2020
276
May, 2021
250
October, 2019
211
August, 2017
200
June, 2019
162
July, 2018
121
February, 2021
120
May, 2019
94
December, 2017
86
November, 2018
79
April, 2019
72
September, 2018
66
July, 2019
58
November, 2019
53
October, 2018
49
August, 2021
47
April, 2018
39
February, 2018
34
December, 2018
30
January, 2019
24
May, 2022
16
March, 2020
14
October, 2017
11
September, 2017
5
December, 2019
3
August, 2018
3
June, 2018
1
March, 2019
Available data
215
fastq
211
bam
207
bigWig
96
bed narrowPeak
89
tsv
63
tagAlign
39
bed broadPeak
39
bigBed narrowPeak
22
bed bed3+
14
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
Organism
204
Homo sapiens
Biosample type
153
tissue
58
primary cell
Organ
168
pancreas
connective tissue
29
epithelium
26
liver
17
adipose tissue
Project
211
AMP
Genome assembly (visualization)
189
hg19
184
GRCh38
Lab
211
AMP-T2D consortium
Audit category:
22
missing controlled_by
Audit category:
10
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
211 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
22
89
1
1
liver
25
pancreas
14
right lobe of liver
1
primary cell
skeletal muscle myoblast
15
2
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
pancreatic acinar cell
1
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