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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
263
ChIP-seq
89
total RNA-seq
9
WGBS
6
RRBS
5
DNase-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
263
DNA binding
Target of assay
179
histone modification
178
histone
99
broad histone mark
78
narrow histone mark
47
transcription factor
37
control
8
RNA binding protein
3
chromatin remodeller
Date released
400
November, 2017
263
August, 2017
218
October, 2019
161
May, 2021
115
May, 2019
80
April, 2019
75
December, 2017
74
October, 2018
70
November, 2018
50
May, 2020
40
May, 2024
39
August, 2021
34
December, 2018
25
January, 2019
25
June, 2019
24
February, 2018
15
October, 2017
11
September, 2018
8
February, 2021
6
September, 2017
2
March, 2020
Available data
151
bigWig
148
bam
148
fastq
112
bed narrowPeak
78
tagAlign
33
bed bed3+
33
bed broadPeak
26
bigBed narrowPeak
13
bigBed broadPeak
Organism
263
Homo sapiens
Biosample type
169
tissue
67
in vitro differentiated cells
27
primary cell
Organ
117
connective tissue
87
pancreas
50
adipose tissue
48
liver
epithelium
22
musculature of body
Project
263
AMP
Genome assembly (visualization)
153
hg19
131
GRCh38
Lab
263
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
12
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
epithelium
BIOSAMPLE
ASSAY
263 results
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Clear Filters
ChIP-seq
tissue
liver
48
islet of Langerhans
42
subcutaneous abdominal adipose tissue
36
skeletal muscle tissue
22
white adipose tissue
12
+ See 2 more…
in vitro differentiated cells
adipocyte
67
primary cell
skeletal muscle myoblast
15
pancreatic endocrine cell
12
See all biosamples
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