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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
270
ChIP-seq
89
total RNA-seq
9
WGBS
6
RRBS
5
DNase-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
270
DNA binding
6
DNA methylation
Target of assay
185
histone modification
184
histone
103
broad histone mark
80
narrow histone mark
47
transcription factor
38
control
8
RNA binding protein
3
chromatin remodeller
Date released
400
November, 2017
276
August, 2017
218
October, 2019
161
May, 2021
115
May, 2019
80
April, 2019
75
December, 2017
74
October, 2018
70
November, 2018
50
May, 2020
40
May, 2024
39
August, 2021
34
December, 2018
25
January, 2019
25
June, 2019
24
February, 2018
15
October, 2017
11
September, 2018
9
July, 2019
8
February, 2021
6
September, 2017
2
March, 2020
Available data
159
fastq
157
bigWig
155
bam
118
bed narrowPeak
85
tagAlign
39
bed broadPeak
33
bed bed3+
32
bigBed narrowPeak
13
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
Organism
269
Homo sapiens
Biosample type
181
tissue
67
in vitro differentiated cells
28
primary cell
Organ
117
connective tissue
94
pancreas
50
adipose tissue
49
liver
epithelium
26
musculature of body
Project
276
AMP
Genome assembly (visualization)
163
hg19
137
GRCh38
Lab
276
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
12
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
organ_slims!
epithelium
BIOSAMPLE
ASSAY
276 results
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Clear Filters
ChIP-seq
RRBS
tissue
liver
48
1
islet of Langerhans
42
subcutaneous abdominal adipose tissue
36
skeletal muscle tissue
22
4
pancreas
14
+ See 2 more…
in vitro differentiated cells
adipocyte
67
primary cell
skeletal muscle myoblast
15
1
pancreatic endocrine cell
12
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