Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
155
ChIP-seq
89
total RNA-seq
4
RRBS
4
WGBS
3
DNase-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
155
DNA binding
89
Transcription
8
DNA methylation
6
DNA accessibility
Target of assay
89
histone modification
88
histone
47
transcription factor
44
narrow histone mark
43
broad histone mark
19
control
8
RNA binding protein
3
chromatin remodeller
Date released
318
November, 2017
258
August, 2017
88
November, 2018
75
December, 2017
58
October, 2018
39
February, 2018
39
February, 2021
39
February, 2023
35
December, 2018
30
January, 2019
24
May, 2022
22
September, 2020
17
July, 2018
17
October, 2017
15
April, 2018
12
September, 2018
6
September, 2017
5
January, 2018
2
June, 2018
1
August, 2018
1
March, 2019
Available data
258
fastq
255
bigWig
253
bam
125
bed narrowPeak
89
tsv
85
tagAlign
41
bed broadPeak
39
bigBed narrowPeak
33
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
251
Homo sapiens
Biosample type
175
tissue
54
in vitro differentiated cells
29
primary cell
Organ
168
pancreas
72
connective tissue
epithelium
28
liver
18
adipose tissue
2
musculature of body
Project
258
AMP
Genome assembly (visualization)
238
hg19
232
GRCh38
Lab
258
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
12
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
organ_slims!
epithelium
BIOSAMPLE
ASSAY
258 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
RRBS
WGBS
DNase-seq
ATAC-seq
FAIRE-seq
tissue
islet of Langerhans
22
89
1
1
liver
25
1
1
pancreas
14
white adipose tissue
12
adipose tissue
2
3
+ See 3 more…
in vitro differentiated cells
adipocyte
53
1
primary cell
skeletal muscle myoblast
15
1
1
pancreatic endocrine cell
12
See all biosamples
Download