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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
102
ChIP-seq
89
total RNA-seq
4
RRBS
4
WGBS
2
ATAC-seq
2
DNase-seq
1
FAIRE-seq
Assay category
102
DNA binding
89
Transcription
8
DNA methylation
5
DNA accessibility
Target of assay
64
histone modification
63
histone
32
narrow histone mark
31
broad histone mark
25
transcription factor
13
control
4
RNA binding protein
1
chromatin remodeller
Date released
318
November, 2017
204
August, 2017
88
November, 2018
58
October, 2018
51
December, 2017
39
February, 2021
39
February, 2023
35
December, 2018
30
January, 2019
24
May, 2022
22
September, 2020
17
July, 2018
17
October, 2017
15
April, 2018
12
September, 2018
6
September, 2017
2
June, 2018
1
January, 2018
1
March, 2019
Available data
207
bigWig
204
fastq
199
bam
89
tsv
82
bed narrowPeak
71
tagAlign
40
bed broadPeak
38
bigBed narrowPeak
26
bed bed3+
14
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
197
Homo sapiens
Biosample type
175
tissue
in vitro differentiated cells
29
primary cell
Organ
168
pancreas
epithelium
28
liver
18
adipose tissue
18
connective tissue
2
musculature of body
Project
204
AMP
Genome assembly (visualization)
189
hg19
183
GRCh38
Lab
204
AMP-T2D consortium
Audit category:
34
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
organ_slims!
epithelium
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
204 results
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ChIP-seq
total RNA-seq
RRBS
WGBS
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
22
89
1
1
liver
25
1
1
pancreas
14
white adipose tissue
12
adipose tissue
2
3
+ See 3 more…
primary cell
skeletal muscle myoblast
15
1
1
pancreatic endocrine cell
12
See all biosamples
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