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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
295
ChIP-seq
94
total RNA-seq
9
WGBS
6
RRBS
5
DNase-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
295
DNA binding
94
Transcription
15
DNA methylation
8
DNA accessibility
Target of assay
192
histone modification
191
histone
107
broad histone mark
83
narrow histone mark
61
transcription factor
42
control
14
RNA binding protein
9
chromatin remodeller
Date released
683
February, 2021
400
November, 2017
382
August, 2017
373
May, 2021
341
May, 2020
313
August, 2021
279
October, 2019
198
June, 2019
153
February, 2023
135
July, 2018
120
May, 2022
115
May, 2019
95
July, 2019
88
November, 2018
80
April, 2019
75
December, 2017
74
October, 2018
58
March, 2020
47
September, 2023
45
November, 2019
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
April, 2018
16
January, 2021
15
May, 2023
12
September, 2018
10
November, 2020
8
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
4
December, 2019
2
June, 2018
August, 2018
1
August, 2022
1
October, 2022
Available data
288
fastq
283
bam
281
bigWig
146
bed narrowPeak
94
tsv
85
tagAlign
60
bigBed narrowPeak
41
bed broadPeak
33
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
405
Homo sapiens
Biosample type
291
tissue
68
in vitro differentiated cells
30
primary cell
23
cell line
Organ
188
pancreas
125
connective tissue
59
liver
57
adipose tissue
epithelium
26
musculature of body
18
blood
18
bodily fluid
7
spleen
Project
412
AMP
Genome assembly (visualization)
285
hg19
258
GRCh38
Lab
412
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
12
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
organ_slims!
epithelium
month_released!
August, 2018
BIOSAMPLE
ASSAY
412 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
DNase-seq
ATAC-seq
FAIRE-seq
tissue
islet of Langerhans
42
89
1
1
liver
48
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
pancreas
14
+ See 5 more…
in vitro differentiated cells
adipocyte
67
1
primary cell
skeletal muscle myoblast
15
1
2
pancreatic endocrine cell
12
cell line
GM12878
18
HepG2
5
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