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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
167
ChIP-seq
89
total RNA-seq
9
WGBS
6
RRBS
5
DNase-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
167
DNA binding
Target of assay
185
histone modification
184
histone
broad histone mark
80
narrow histone mark
47
transcription factor
38
control
8
RNA binding protein
3
chromatin remodeller
Date released
350
November, 2017
175
October, 2019
167
August, 2017
85
May, 2021
70
November, 2018
67
December, 2017
59
May, 2019
55
October, 2018
50
May, 2020
43
April, 2019
34
December, 2018
31
August, 2021
21
January, 2019
20
May, 2024
17
June, 2019
16
February, 2018
8
February, 2021
6
September, 2017
5
October, 2017
4
September, 2018
2
March, 2020
Available data
112
bam
112
fastq
102
bigWig
68
bed narrowPeak
40
tagAlign
27
bed bed3+
17
bed broadPeak
14
bigBed narrowPeak
7
bigBed broadPeak
Organism
164
Homo sapiens
Biosample type
103
tissue
47
in vitro differentiated cells
17
primary cell
Organ
77
connective tissue
62
pancreas
30
adipose tissue
29
liver
epithelium
10
musculature of body
Project
167
AMP
Genome assembly (visualization)
104
hg19
94
GRCh38
Lab
167
AMP-T2D consortium
Audit category:
34
missing controlled_by
Audit category:
9
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
organ_slims!
epithelium
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
167 results
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Clear Filters
ChIP-seq
tissue
liver
29
islet of Langerhans
28
subcutaneous abdominal adipose tissue
16
white adipose tissue
12
skeletal muscle tissue
10
+ See 2 more…
in vitro differentiated cells
adipocyte
47
primary cell
skeletal muscle myoblast
9
pancreatic endocrine cell
8
See all biosamples
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