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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
total RNA-seq
85
ChIP-seq
9
WGBS
6
DNase-seq
6
RRBS
4
MeRIP-seq
3
ATAC-seq
1
FAIRE-seq
Assay category
93
Transcription
85
DNA binding
15
DNA methylation
10
DNA accessibility
Target of assay
histone modification
184
histone
103
broad histone mark
80
narrow histone mark
47
transcription factor
40
control
8
RNA binding protein
3
chromatin remodeller
2
nucleotide modification
Date released
683
February, 2021
314
May, 2020
314
November, 2017
296
August, 2021
235
May, 2021
197
August, 2017
181
June, 2019
153
February, 2023
135
July, 2018
120
May, 2022
104
October, 2019
95
July, 2019
88
November, 2018
58
December, 2017
56
March, 2020
47
September, 2023
45
November, 2019
44
October, 2018
40
September, 2020
35
December, 2018
26
May, 2019
25
February, 2020
23
February, 2018
23
January, 2019
20
April, 2019
19
April, 2020
16
April, 2018
16
January, 2021
15
May, 2023
11
October, 2017
10
November, 2020
8
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
5
May, 2024
4
December, 2019
2
June, 2018
1
August, 2018
1
August, 2022
1
October, 2022
1
September, 2018
Available data
170
bam
169
fastq
151
bigWig
93
tsv
33
bed narrowPeak
22
bed bed3+
11
tagAlign
10
bigBed narrowPeak
6
bed bedMethyl
6
bigBed bedMethyl
5
bed broadPeak
5
bigBed broadPeak
Organism
206
Homo sapiens
Biosample type
164
tissue
31
in vitro differentiated cells
12
primary cell
Organ
132
pancreas
62
connective tissue
25
adipose tissue
epithelium
21
liver
7
musculature of body
Project
207
AMP
Genome assembly (visualization)
156
hg19
149
GRCh38
Lab
203
AMP-T2D consortium
4
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
23
missing controlled_by
Audit category:
6
inconsistent control read length
organ_slims!
epithelium
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
207 results
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total RNA-seq
ChIP-seq
WGBS
DNase-seq
RRBS
MeRIP-seq
ATAC-seq
FAIRE-seq
tissue
islet of Langerhans
89
14
1
4
1
liver
15
3
1
white adipose tissue
12
subcutaneous abdominal adipose tissue
5
3
skeletal muscle tissue
3
4
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in vitro differentiated cells
adipocyte
30
1
primary cell
osteoblast
4
1
1
skeletal muscle myoblast
3
2
1
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