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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
128
ChIP-seq
89
total RNA-seq
6
WGBS
4
RRBS
1
ATAC-seq
1
DNase-seq
1
FAIRE-seq
Assay category
128
DNA binding
89
Transcription
10
DNA methylation
3
DNA accessibility
Target of assay
91
histone
91
histone modification
54
broad histone mark
37
narrow histone mark
19
transcription factor
18
control
2
RNA binding protein
Date released
544
February, 2021
236
October, 2019
230
August, 2017
229
August, 2021
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
69
July, 2019
47
September, 2023
40
May, 2021
40
November, 2019
37
March, 2020
26
May, 2022
24
February, 2020
23
October, 2017
19
April, 2020
19
November, 2018
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
160
bigWig
147
fastq
144
bam
89
tsv
48
bed narrowPeak
39
tagAlign
26
bed broadPeak
23
bed bed3+
16
bigBed narrowPeak
4
bed bedMethyl
4
bigBed bedMethyl
Organism
223
Homo sapiens
Biosample type
230
tissue
68
in vitro differentiated cells
59
primary cell
Organ
147
pancreas
57
adipose tissue
57
connective tissue
liver
26
musculature of body
Project
230
AMP
Genome assembly (visualization)
160
hg19
139
GRCh38
Lab
230
AMP-T2D consortium
Audit category:
22
missing controlled_by
Audit category:
4
inconsistent control read length
1
inconsistent assembly
organ_slims!
liver
BIOSAMPLE
ASSAY
230 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
42
89
1
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
pancreas
14
white adipose tissue
12
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