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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
ChIP-seq
7
DNase-seq
6
WGBS
1
ATAC-seq
Assay category
129
DNA binding
8
DNA accessibility
6
DNA methylation
Target of assay
77
histone
77
histone modification
44
broad histone mark
35
transcription factor
32
narrow histone mark
17
control
5
RNA binding protein
2
chromatin remodeller
Date released
455
February, 2021
125
August, 2017
23
October, 2018
18
July, 2019
18
June, 2019
14
February, 2023
6
November, 2020
5
August, 2021
4
October, 2019
2
April, 2018
2
February, 2020
2
July, 2018
2
March, 2020
2
May, 2021
1
August, 2018
1
January, 2018
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
89
bam
80
bigWig
72
fastq
61
bed narrowPeak
22
tagAlign
18
bigBed narrowPeak
17
bed bed3+
8
bed broadPeak
7
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
143
Homo sapiens
Biosample type
68
in vitro differentiated cells
58
tissue
17
primary cell
Organ
192
pancreas
143
connective tissue
81
kidney
69
musculature of body
58
adipose tissue
56
liver
49
epithelium
35
heart
32
limb
30
brain
18
ureter
7
eye
7
vasculature
5
blood vessel
2
artery
Project
143
AMP
Genome assembly (visualization)
80
GRCh38
78
hg19
Lab
143
AMP-T2D consortium
Audit category:
12
inconsistent ontology term
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
BIOSAMPLE
ASSAY
143 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
ATAC-seq
in vitro differentiated cells
adipocyte
67
1
tissue
subcutaneous abdominal adipose tissue
36
3
white adipose tissue
12
adipose tissue
2
3
omental fat pad
1
subcutaneous adipose tissue
1
primary cell
cardiac fibroblast
5
3
mesenchymal stem cell
7
brain pericyte
1
hepatic stellate cell
1
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