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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
578
ChIP-seq
89
total RNA-seq
6
RRBS
4
ATAC-seq
4
DNase-seq
3
WGBS
1
FAIRE-seq
Assay category
578
DNA binding
89
Transcription
9
DNA accessibility
9
DNA methylation
Target of assay
257
transcription factor
212
histone modification
211
histone
115
broad histone mark
106
control
96
narrow histone mark
66
recombinant protein
41
RNA binding protein
16
chromatin remodeller
2
other context
2
other post-translational modification
Date released
406
November, 2017
397
May, 2021
341
May, 2020
314
August, 2021
310
October, 2019
279
August, 2017
260
February, 2021
200
June, 2019
200
May, 2022
190
February, 2023
166
July, 2018
120
May, 2019
94
December, 2017
90
July, 2019
87
November, 2018
80
April, 2019
73
September, 2018
62
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
47
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
18
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
January, 2018
5
March, 2019
3
August, 2018
3
June, 2018
3
October, 2022
1
August, 2022
1
March, 2023
Available data
596
bam
535
bigWig
532
fastq
403
bed narrowPeak
345
bigBed narrowPeak
134
tagAlign
103
bed broadPeak
89
tsv
78
bigBed broadPeak
22
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
3
tar
Organism
685
Homo sapiens
Biosample type
315
cell line
302
tissue
68
primary cell
Organ
369
liver
181
pancreas
connective tissue
91
brain
57
adipose tissue
35
epithelium
26
musculature of body
6
vasculature
3
blood vessel
Project
685
AMP
Genome assembly (visualization)
487
hg19
458
GRCh38
Lab
685
AMP-T2D consortium
Audit category:
32
missing controlled_by
Audit category:
31
inconsistent control read length
5
inconsistent control run_type
2
inconsistent assembly
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
685 results
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Clear Filters
ChIP-seq
total RNA-seq
RRBS
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
cell line
HepG2
315
tissue
islet of Langerhans
42
89
1
1
liver
48
1
3
skeletal muscle tissue
22
4
layer of hippocampus
22
caudate nucleus
15
+ See 6 more…
primary cell
skeletal muscle myoblast
15
1
2
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
astrocyte of the cerebellum
3
+ See 3 more…
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