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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
89
total RNA-seq
50
ChIP-seq
5
ATAC-seq
4
DNase-seq
4
RRBS
1
FAIRE-seq
Assay category
89
Transcription
50
DNA binding
10
DNA accessibility
4
DNA methylation
Target of assay
histone modification
122
histone
61
broad histone mark
60
narrow histone mark
47
transcription factor
8
RNA binding protein
3
chromatin remodeller
3
control
Date released
574
February, 2021
257
November, 2017
233
May, 2020
200
May, 2021
168
June, 2019
164
July, 2018
153
August, 2017
91
July, 2019
71
November, 2018
49
April, 2018
49
November, 2019
47
December, 2017
46
October, 2019
45
February, 2023
42
August, 2021
40
September, 2018
39
May, 2022
30
December, 2018
29
March, 2020
19
January, 2019
17
October, 2018
15
February, 2018
7
October, 2017
7
September, 2017
6
November, 2020
5
April, 2019
5
December, 2019
5
May, 2019
3
August, 2018
3
January, 2018
3
June, 2018
3
March, 2019
3
October, 2022
1
May, 2023
Available data
152
fastq
149
bam
147
bigWig
89
tsv
34
bed narrowPeak
21
bed bed3+
12
bigBed narrowPeak
4
bed bedMethyl
4
bed broadPeak
4
bigBed bedMethyl
4
bigBed broadPeak
1
tagAlign
Organism
153
Homo sapiens
Biosample type
120
tissue
24
in vitro differentiated cells
9
primary cell
Organ
101
pancreas
37
connective tissue
13
adipose tissue
7
liver
3
epithelium
2
musculature of body
Project
153
AMP
Genome assembly (visualization)
153
hg19
146
GRCh38
Lab
153
AMP-T2D consortium
Audit category:
23
missing controlled_by
Audit category:
6
inconsistent control read length
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
153 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
RRBS
FAIRE-seq
tissue
islet of Langerhans
89
7
1
1
white adipose tissue
12
liver
5
1
skeletal muscle tissue
2
right lobe of liver
1
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in vitro differentiated cells
adipocyte
23
1
primary cell
skeletal muscle myoblast
3
2
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
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