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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
89
total RNA-seq
76
ChIP-seq
9
WGBS
6
RRBS
5
ATAC-seq
5
DNase-seq
1
FAIRE-seq
Assay category
89
Transcription
76
DNA binding
15
DNA methylation
11
DNA accessibility
Target of assay
histone modification
186
histone
103
broad histone mark
82
narrow histone mark
48
control
28
transcription factor
6
RNA binding protein
3
chromatin remodeller
Date released
713
February, 2021
318
November, 2017
314
May, 2020
297
August, 2021
257
May, 2021
201
February, 2023
199
May, 2022
191
August, 2017
168
July, 2018
110
October, 2019
104
July, 2019
79
November, 2018
61
March, 2020
59
September, 2020
58
December, 2017
51
November, 2019
49
April, 2018
47
September, 2023
46
October, 2018
41
September, 2018
35
December, 2018
28
May, 2019
25
February, 2020
23
February, 2018
23
January, 2019
20
April, 2019
19
April, 2020
16
January, 2021
15
May, 2023
15
November, 2020
12
June, 2019
11
October, 2017
10
December, 2019
9
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
184
fastq
179
bam
149
bigWig
89
tsv
34
bed narrowPeak
bed bed3+
12
bigBed narrowPeak
11
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
4
bed broadPeak
4
bigBed broadPeak
Organism
190
Homo sapiens
Biosample type
146
tissue
24
in vitro differentiated cells
21
primary cell
Organ
115
pancreas
45
connective tissue
21
adipose tissue
18
liver
15
epithelium
7
musculature of body
Project
191
AMP
Genome assembly (visualization)
132
hg19
125
GRCh38
Lab
191
AMP-T2D consortium
Audit category:
13
missing controlled_by
Audit category:
2
inconsistent control read length
target.investigated_as!
histone modification
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
191 results
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Clear Filters
total RNA-seq
ChIP-seq
WGBS
RRBS
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
89
7
1
1
liver
12
3
1
subcutaneous abdominal adipose tissue
5
3
white adipose tissue
8
skeletal muscle tissue
3
4
+ See 4 more…
in vitro differentiated cells
adipocyte
23
1
primary cell
pancreatic alpha cell
6
1
pancreatic beta cell
6
1
skeletal muscle myoblast
3
1
2
pancreatic acinar cell
1
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